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Business / Other Tools / Unipro UGENE 1.1
Unipro UGENE 1.1
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Unipro UGENE 1.1 Description
UGENE is a free cross-platform genome analysis suite. It works perfectly on Windows, Mac OS or Linux and requires only a few clicks to install.
UGENE is a free cross-platform genome analysis suite. It works perfectly on Windows, Mac OS or Linux and requires only a few clicks to install. Main features: Integrated tools -Multiple sequence alignment using MUSCLE 3, KAlign, Clustal; -HMM profiles build and search, based on the source of HMMER 2 and HMMER 3; -PCR Primers design using Primer 3; -Cloning in silico capabilities; -Queries to NCBI BLAST and CDD databases; -Protein secondary structure prediction using GOR IV and PSIPRED; -Phylogenetic analysis with Phylip; -Search for restriction enzymes and integration with REBASE; -Extremely fast repeat finder; -DNA reference assembly using Bowtie; -Search for transcription factor binding sites using SITECON; -Protein back translation; -ORF finder; -Complete Smith-Waterman algorithm implementation; -Support for external tools: BLAST , MAFFT, T-Coffee. User interface -Visual and interactive genome browsing including circular plasmid view; -Multiple alignment editor; -Chromatograms visualization; -3D viewer for files in PDB and MMDB formats with anaglyph stereo mode support; -Phylogenetic tree viewer; -Dot plot visualization; -Query designer enables search for complex annotation patterns; -Easy to use workflow designer for custom computational workflows. High performance computing in UGENE -Complete support of modern multicore processors and SSE instructions; -Out of the box support of modern GPUs using NVIDIA CUDA and ATI Stream; -Support for cloud computing: running computational tasks on Amazon EC2 cloud; -Support for supercomputers and distributed computing. Cooperation -Can be used for education purposes in schools and universities; -Features to be included into the next release are initiated by users; -UGENE team is ready for collaboration in related projects, both free or commercial.
OS: Windows
Tags: Open Source - Opensource - Bioinformatics - Visual Interface - Molecular Biology - Dna - Sequence - Dna Sequence - Dna Transcription - Alignment - Hmmer - Muscle - Repeats - Dna Sequence Analysis - Protein - Translation Tool - Sequence Alignment - Sequence Analysis - Reverse Complement - Dna Sequence Alignment Software - Bioinformatics Solutions - Dna Sequence Editor